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AP Biology Vocabulary Review

AB
matteranything takes up space and has mass
compoundsubstance consisting of two or more elements in a fixed ratio
elementsubstance composed of only one type of atom
trace elementsan element indispensable for life but required in extremely minimum amounts
atomsmallest unit of matter that retains property of an element
neutronan electrically neutral particle found in the nucleus of an atom
protona subatomic particle with single positive charge found in nucleus of an atom
electrona subatomic particle with a single negative charge; one or more electrons move around the nucleus
isotopesone of several atomic forms of an element each containing different number of neutrons and different in atomic mass
valence electronsthe electrons in the outermost electron shell
chemical bondsan attraction between two atoms resulting from a sharing of outer shell electrons or the presence of opposite charges on the atom; the bonded atoms gain compounds outer electron shells
covalent bondsa type of strong chemical bond in which two atoms share one pair of valence electrons
polar covalent bondsa type of covalent bond between atoms that differ in electronegativity. the shared electrons are pulled closer to the more electronegative atom. making one slightly negative and the other slightly positive
electronegativitythe attraction of an atom for the electrons of a covalent bond
aniona negatively charged ion
cationan ion with a positive charge produced by the loss of one or more electrons
hydrogen bonda type of weak chemical bond formed when the slightly positive hydrogen atom of a polar covalent bond in one molecules is attracted to the slightly negative atom of a polar covalent in another bond
cohesionthe binding together of like molecules often by hydrogen bonds
adhesionthe attraction between different kinds of molecules
surface tensiona measure of how difficult it is to stretch or break the surface of a liquid
heattotal amount of kinetic energy due to molecular motion in a body of matter. It is energy in most random form
temperaturea measure of the intensity of heat in degrees reflecting molecules average kinetic energy
specific heatthe amount of heat that must be absorbed lost for one gram of a substance to change its temperature by one degree
solutiona homogeneous mixture of two or more substance (liquid)
solventdissolving agent of a solution
solutea substance that is dissolved in a solution
aqueous solutiona solution in which water is the solvent
acida substance that increases the hydrogen ion concentration of a solution
basea substance that reduces the hydrogen ion concentration of a solution
hydrophilichaving an affinity to water
hydrophobichaving aversion to water tend to coalesce and form droplets of water
pHA measure of hydrogen ion concentration equal to –log [H+] and ranging in value from 0 to 14.
buffersA substance that consists of acid and base forms in a solution and that minimizes changes in pH when extraneous acids or bases are added to the solution.
acid precipitationRain, snow, or fog that is more acidic than pH 5.6.
organic chemistryThe study of carbon compounds (organic compounds).
hydrocarbonsAn organic molecule consisting only of carbon and hydrogen.
isomersOne of several organic compounds with the same molecular formula but different structures and therefore different properties. The three types are structural , geometric and enantiomers.
structural isomersCompounds that have the same molecular formula but differ in the covalent arrangements of their atoms.
geometric isomersCompounds that have the same molecular formula but differ in the spatial arrangements of their atoms.
enantiomersMolecules that are mirror images of each other.
functional groupsA specific configuration of atoms commonly attached to the carbon skeletons of organic molecules and usually involved in chemical reactions.
hydroxyl groupsA functional group consisting of a hydrogen atom joined to an oxygen atom by a polar covalent bond. Molecules possessing this group are soluble in water and are called alcohols.
carbonyl groupsA functional group present in aldehydes and ketones and consisting of a carbon atom double-bonded to an oxygen atom.
aldehydeAn organic molecule with a carbonyl group located at the end of the carbon skeleton.
ketoneAn organic compound with a carbonyl group of which the carbon atom is bonded to two other carbons.
carboxyl groupA functional group present in organic acids and consisting of a single carbon atom double-bonded to an oxygen atom and also bonded to a hydroxyl group.
amino groupA functional group that consists of a nitrogen atom bonded to two hydrogen atoms; can act as a base in solution, accepting a hydrogen ion and acquiring a charge of +1.
sulfhydryl groupA functional group consisting of a sulfur atom bonded to a hydrogen atom (—SH).
phosphate groupA functional group important in energy transfer.
macromoleculeA giant molecule formed by the joining of smaller molecules, usually by a condensation reaction. Polysaccharides, proteins, and nucleic acids are macromolecules.
polymerA long molecule consisting of many similar or identical monomers linked together.
monomerThe subunit that serves as the building block of a polymer.
condensation reactionA reaction in which two molecules become covalently bonded to each other through the loss of a small molecule, usually water; also called dehydration reaction.
dehydration reactionA chemical reaction in which two molecules covalently bond to each other with the removal of a water molecule.
hydrolysisA chemical process that lyses, or splits, molecules by the addition of water; an essential process in digestion.
carbohydratesA sugar (monosaccharide) or one of its dimers (disaccharides) or polymers (polysaccharides).
monosaccharidesThe simplest carbohydrate, active alone or serving as a monomer for disaccharides and polysaccharides. Also known as simple sugars, the molecular formulas of are generally some multiple of CH2O.
disaccharidesA double sugar, consisting of two monosaccharides joined by dehydration synthesis.
starchA storage polysaccharide in plants consisting entirely of glucose.
glycogenAn extensively branched glucose storage polysaccharide found in the liver and muscle of animals; the animal equivalent of starch.
celluloseA structural polysaccharide of cell walls, consisting of glucose monomers joined by b-1, 4-glycosidic linkages.
fatty acidA long carbon chain carboxylic acid. vary in length and in the number and location of double bonds; three fatty acids linked to a glycerol molecule form fat.
saturated fatty acidA fatty acid in which all carbons in the hydrocarbon tail are connected by single bonds, thus maximizing the number of hydrogen atoms that can attach to the carbon skeleton.
unsaturated fatty acidA fatty acid possessing one or more double bonds between the carbons in the hydrocarbon tail. Such bonding reduces the number of hydrogen atoms attached to the carbon skeleton.
phospholipidsA molecule that is a constituent of the inner bilayer of biological membranes, having a polar, hydrophilic head and a nonpolar, hydrophobic tail.
cholesterolA steroid that forms an essential component of animal cell membranes and acts as a precursor molecule for the synthesis of other biologically important steroids.
steroidsA type of lipid characterized by a carbon skeleton consisting of four rings with various functional groups attached.
polysaccharidesA polymer of up to over a thousand monosaccharides, formed by dehydration reactions.
glycosidic linkageA covalent bond formed between two monosaccharides by a dehydration reaction.
fatconstructed from glycerol and fatty acids
amino acidAn organic molecule possessing both carboxyl and amino groups. Amino acids serve as the monomers of proteins.
proteinA three-dimensional biological polymer constructed from a set of 20 different monomers called amino acids.
peptide bondThe covalent bond between two amino acid units, formed by a dehydration reaction
beta (B) pleated sheetOne form of the secondary structure of proteins in which the polypeptide chain folds back and forth, or where two regions of the chain lie parallel to each other and are held together by hydrogen bonds.
denaturationFor proteins, a process in which a protein unravels and loses its native conformation, thereby becoming biologically inactive. For DNA, the separation of the two strands of the double helix. Denaturation occurs under extreme conditions of pH, salt concentration, and temperature.
RNAclass of nucleic acid that contains ribose and uracil; three typres exists all with different functions
DNAA double-stranded, helical nucleic acid molecule capable of replicating and determining the inherited structure of a cell's proteins.
nucleic acidA polymer (polynucleotide) consisting of many nucleotide monomers; serves as a blueprint for proteins and, through the actions of proteins, for all cellular activities. The two types are DNA and RNA.
purinesOne of two families of nitrogenous bases found in nucleotides. Adenine (A) and guanine (G) are purines.
pyrimidinesOne of two families of nitrogenous bases found in nucleotides. Cytosine (C), thymine (T), and uracil (U) are pyrimidines.
organellesOne of several formed bodies with specialized functions, suspended in the cytoplasm of eukaryotic cells.
electron microscopeA microscope that focuses an electron beam through a specimen, resulting in resolving power a thousandfold greater than that of a light microscope. A transmission electron microscope (TEM) is used to study the internal structure of thin sections of cells. A scanning electron microscope (SEM) is used to study the fine details of cell surfaces.
cell fractionationThe disruption of a cell and separation of its organelles by centrifugation.
ultra centrifugesA machine that spins test tubes at the fastest speeds to separate liquids and particles of different densities.
cytosol (cytoplasm)The semifluid portion of the cytoplasm.
prokaryotic cellA type of cell lacking a membrane-enclosed nucleus and membrane-enclosed organelles; found only in the domains Bacteria and Archaea.
nucleoidA dense region of DNA in a prokaryotic cell.
cytoplasmThe entire contents of the cell, exclusive of the nucleus, and bounded by the plasma membrane.
plasma membraneThe membrane at the boundary of every cell that acts as a selective barrier, thereby regulating the cell's chemical composition.
nucleus(1) An atom's central core, containing protons and neutrons. (2) The chromosome-containing organelle of a eukaryotic cell. (3) A cluster of neurons.
nuclear laminaA netlike array of protein filaments that maintains the shape of the nucleus.
chromatinThe complex of DNA and proteins that makes up a eukaryotic chromosome. When the cell is not dividing,exists as a mass of very long, thin fibers that are not visible with a light microscope.
food vacuolesA membranous sac formed by phagocytosis.
contractile vacuolesA membranous sac that helps move excess water out of the cell.
plastidsOne of a family of closely related plant organelles, including chloroplasts, chromoplasts, and amyloplasts (leucoplasts).
central vacuoleA membranous sac in a mature plant cell with diverse roles in reproduction, growth, and development.
tonoplastA membrane that encloses the central vacuole in a plant cell, separating the cytosol from the cell sap
mitochondriaAn organelle in eukaryotic cells that serves as the site of cellular respiration.
chloroplastsAn organelle found only in plants and photosynthetic protists that absorbs sunlight and uses it to drive the synthesis of organic compounds from carbon dioxide and water.
cristae (plural, cristae)An infolding of the inner membrane of a mitochondrion that houses the electron transport chain and the enzyme catalyzing the synthesis of ATP.
thylakoidsA flattened membrane sac inside the chloroplast, used to convert light energy to chemical energy.
granaA stacked portion of the thylakoid membrane in the chloroplast. Grana function in the light reactions of photosynthesis
stromaThe fluid of the chloroplast surrounding the thylakoid membrane; involved in the synthesis of organic molecules from carbon dioxide and water.
peroxisomeA microbody containing enzymes that transfer hydrogen from various substrates to oxygen, producing and then degrading hydrogen peroxide.
cytoskeletonA network of microtubules, microfilaments, and intermediate filaments that branch throughout the cytoplasm and serve a variety of mechanical and transport functions.
centrosomeMaterial present in the cytoplasm of all eukaryotic cells, important during cell division; the microtubule-organizing center.
flagellaA long cellular appendage specialized for locomotion, formed from a core of nine outer doublet microtubules and two inner single microtubules, ensheathed in an extension of plasma membrane.
ciliaA short cellular appendage specialized for locomotion, formed from a core of nine outer doublet microtubules and two inner single microtubules ensheathed in an extension of plasma membrane.
actinA globular protein that links into chains, two of which twist helically about each other, forming microfilaments in muscle and other contractile elements in cells.
cell wallA protective layer external to the plasma membrane in plant cells, bacteria, fungi, and some protists. In plant cells, the wall is formed of cellulose fibers embedded in a polysaccharide-protein matrix. The primary cell wall is thin and flexible, whereas the secondary cell wall is stronger and more rigid and is the primary constituent of wood.
extracellular matrixThe substance in which animal tissue cells are embedded consisting of protein and polysaccharides.
collagenA glycoprotein in the extracellular matrix of animal cells that forms strong fibers, found extensively in connective tissue and bone; the most abundant protein in the animal kingdom.
chromosomesA threadlike, gene-carrying structure found in the nucleus. Each chromosome consists of one very long DNA molecule and associated proteins.
nucleolusA specialized structure in the nucleus, formed from various chromosomes and active in the synthesis of ribosomes.
ribosomesA cell organelle constructed in the nucleolus and functioning as the site of protein synthesis in the cytoplasm; consists of rRNA and protein molecules, which make up two subunits
smooth ERThat portion of the endoplasmic reticulum that is free of ribosomes.
Rough ERThat portion of the endoplasmic reticulum studded with ribosomes.
endoplasmic reticulumAn extensive membranous network in eukaryotic cells, continuous with the outer nuclear membrane and composed of ribosome-studded (rough) and ribosome-free (smooth) regions.
glycoproteinsA protein covalently attached to a carbohydrate.
golgi apparatusAn organelle in eukaryotic cells consisting of stacks of flat membranous sacs that modify, store, and route products of the endoplasmic reticulum.
transport vesiclesA tiny membranous sac in a cell's cytoplasm carrying molecules produced by the cell.
lysosomesA membrane-enclosed bag of hydrolytic enzymes found in the cytoplasm of eukaryotic cells.
phagocytosisA type of endocytosis involving large, particulate substances.
selective permeability(the ability to allow some sub. to cross the plasma membrane more easily) A property of biological membranes that allows some substances to cross more easily than others.
fluid mosaic modelThe currently accepted model of cell membrane structure, which envisions the membrane as a mosaic of individually inserted protein molecules drifting laterally in a fluid bilayer of phospholipids.
integral proteinstypically transmembrane proteins with hydrophobic regions that completely span the hydrophobic interior of the membrane.
peripheral proteinsProtein appendages loosely bound to the surface of the membrane and not embedded in the lipid bilayer.
diffusion Tthe spontaneous tendency of a substance to move down its concentration gradient from a more concentrated to a less concentrated area.
concentration gradientAn increase or decrease in the density of a chemical substance in an area. Cells often maintain concentration gradients of ions across their membranes. When a gradient exists, the ions or other chemical substances involved tend to move from where they are more concentrated to where they are less concentrated
passive transportThe diffusion of a substance across a biological membrane
hypertonicIn comparing two solutions, referring to the one with a greater solute concentration.
hypotonicIn comparing two solutions, the one with a lower solute concentration.
isotonicHaving the same solute concentration as another solution.
osmoregulationThe control of water balance in organisms living in hypertonic, hypotonic, or terrestrial environments.
osmosisThe diffusion of water across a selectively permeable membrane.
turgidFirm. Walled cells become turgid as a result of the entry of water from a hypotonic environment.
flaccidLimp. Walled cells are limp in isotonic surroundings, where there is no tendency for water to enter.
plasmolysisA phenomenon in walled cells in which the cytoplasm shrivels and the plasma membrane pulls away from the cell wall when the cell loses water to a hypertonic environment
facilitated diffusionThe spontaneous passage of molecules and ions, bound to specific carrier proteins, across a biological membrane down their concentration gradients
aquaporins(water channel proteins that facilitate the amount of diffusion)A transport protein in the plasma membrane of a plant or animal cell that specifically facilitates the diffusion of water across the membrane (osmosis).
gated channelsA protein channel in a cell membrane that opens or closes in response to a particular stimulus.
active transportThe movement of a substance across a biological membrane against its concentration or electrochemical gradient with the help of energy input and specific transport proteins.
sodium potassium pumpA special transport protein in the plasma membrane of animal cells that transports sodium out of the cell and potassium into the cell against their concentration gradients.
electrochemical gradientThe diffusion gradient of an ion, representing a type of potential energy that accounts for both the concentration difference of the ion across a membrane and its tendency to move relative to the membrane potential.
proton pumpAn active transport mechanism in cell membranes that consumes ATP to force hydrogen ions out of a cell and, in the process, generates a membrane potential
cotransportThe coupling of the "downhill" diffusion of one substance to the "uphill" transport of another against its own concentration gradient.
exocytosisthe cellular secretion of macromolecules by the fusion of vesicles with the plasma membrane.
endocytosisThe cellular uptake of macromolecules and particulate substances by localized regions of the plasma membrane that surround the substance and pinch off to form an intracellular vesicle.
phagocytosisA type of endocytosis involving large, particulate substances.
pinocytosisA type of endocytosis in which the cell ingests extracellular fluid and its dissolved solutes.
ligandsA molecule that binds specifically to a receptor site of another molecule.
receptor mediated endocytosisThe movement of specific molecules into a cell by the inward budding of membranous vesicles containing proteins with receptor sites specific to the molecules being taken in; enables a cell to acquire bulk quantities of specific substances.
electrogenic pumpAn ion transport protein generating voltage across the membrane.
nucleus chromatin, nucleolus, nuclear envelope-->directs protein synthesis by synthesizing RNA (mRNA) and sending it to the cytoplasm via nuclear pores-->the mRNA is made according to instruction provided by DNA --> mRNA reaches cytoplasm ribosomes translate the genetic message into polypeptide
chromatinorganization of DNA and proteins into fibrous material
nucleolusspecialized structure in special type of RNA, ribosomal RNA, is synthesized + assembled w/ proteins imported from cytoplasm into main components of ribsomal subunits which pass nuclear portes to cytoplasm where they combine to form ribosomes
nuclear envelopedouble membrane perforated by pores which regulate entry and exit of certain macromolecules and particles
ribosomesuse info, from the DNA to make proteins and carry out protein synthesis
free ribosomessuspended in cytosol which will function in cytosol (ex:enzymes)
bound ribosomesattached to outside of ER or nuclear envelope- proteins that are destined for insertion into membranes or packaging certain organelles (ex: lysosome)
endoplasmic reticulumnetwork of membrane sacs and tubes; active in membrane synthesis and other synthetic and metabolic processes
smooth ERsynthesis of lipids, phospholipids and steroid sex hormones-help detoxify drugs and poisons (liver cells) involves adding hydroxyl groups to drugs to make soluble and easier to flush from body
rough ERsynthesis of secretory proteins (glycoproteins) specialized cells secrete proteins produced by rough ER ribosomes and membrane production
golgi apparatuscenter of manufacturing, warehousing, sorting, and shipping products are usually modified during their transit from the cis pole to the trans pole
cis face golgi appartususually located near the ER a vesicle that buds from the ER will add its membrane and the contents of its lumen,cavity, to this face
trans face golgi apparatusgives rise to vesicles which pinch off and travel to other sites
lysosomesdigestive compartments (macromolecules) carry out intracellular digestion . Use their hydrolytic enzymes to recycle the cell's own organic material (autophagy)
mitochondriasites of cellular respiration the catbolic process that generates ATP by extracting energy from sugars, fats + other fuels w/ oxygens help
chloroplastsites of photosynthesis. convert solar energy--> chemical energy by absorbing sunlight and using it to drive the synthesis of organic compounds from CO2 and H20
peroxisomesgenerate and degrade H2O2 in performing various metabolic functions transfer hydrogen from various substrates to oxygen and they produce H2O2. Use O to break fatty acids that can be sent to mitochondria
cytoskeletonorganizing the structures and activities of cells
microtubulesmaintenance of cell shape (compression resisting girders) cell motility organelle and chromosome movement
microfilamentsactin (tension bearing elements ) muscle contraction
intermediate filamentsanchorage of nucleus and certain other organelles, formation of nuclear lamina
centrosomesregion where cells microtubules are initiated
centriolescomposed of nine sets of triplet microtubule arrange in a ring
ECMfunction in support, adhesion, movement, and regulation (glycoproteins) collagen most abundant in animal cells
tight junctionsmembranes of neighboring cells are actually fused forming continuous belts around cell to prevent leakage of extracellular fluid
desmosomefunction like rivets fastening cells together into strong sheets Intermediate filaments reinforce this
gap junctionsprovide cytoplasmic channels between adjacent animal cells
amphipathic moleculesAmphipathic molecules have both hydrophobic regions and hydrophilic regions <phospholipids>.
fluid mosaic modelThe arrangement of phospholipids and proteins in biological membranes is described by the
freeze-fracturesplits a membrane along the middle of the phospholipid bilayer. When a freeze-fracture preparation is viewed with an electron microscope, protein particles are interspersed in a smooth matrix, supporting the fluid mosaic model.
Peripheral proteinsnot embedded in the lipid bilayer at all. Instead, the are loosely bound to the surface of the protein, often connected to integral proteins
Integral proteinspenetrate the hydrophobic core of the lipid bilayer, often completely spanning the membrane (as transmembrane proteins).
functions of the proteins1. Transport of specific solutes into or out of cells. 2. Enzymatic activity, sometimes catalyzing one of a number of steps of a metabolic pathway 3. Signal transduction, relaying hormonal messages to the cell. 4. Cell-cell recognition, allowing other proteins to attach two adjacent cells together 5. Intercellular joining of adjacent cells with gap or tight junctions 6. Attachment to the cytoskeleton and extracellular matrix, maintaining cell shape and stabilizing the location of certain membrane proteins.
Cell-cell recognitionthe ability of a cell to distinguish one type of neighboring cell from another is crucial to the functioning of an organism carbohydrates are important for this
transport proteinsspan the membrane 1. channel proteins which have a hydrophilic channel that certain molecules or ions can use as a tunnel through the membrane (aquaporins facilitate the passage of water through the membrane) 2. carrier proteins bind to molecules and change shape to shuttle them across the membrane
diffusionthe tendency of molecules of any substance to spread out in the available space it is driven by intrinsic kinetic energy (thermal motion or heat) of molecules
passive transportthe diffusion of a substance across a biological membrane because it require no energy from the cell to make it happen - the concentration gradient represents potential energy and drives fusion
concentration gradientan increase or decrease in the density of a chemical substance in an area -->substances tend to move form where there are more concentrated to where they are less concentrated
osmosisthe passive transport of water; diffusion of water across a selectively permeable membrane; the direction of osmosis is determined only by a difference in total solute concentration ; the kind of solutes in the solution do not matter
facilitated diffusionthe passive movement of molecules down their concentration gradient via transport proteins
gated channelsmany ion channels function as gated channels these channels open or close depending on the presence or absence of a chemical or physical stimulus
active transportuses energy to move solutes against their gradients; requires the cell to expend metabolic energy; enables a cell to maintain its internal concentrations of small molecules that would otherwise diffuse across he membrane ; ATP supplies the energy for active transport
ATP ATPcan power active transport by transferring a phosphate group from ATP to the transport protein. This may induce a conformation change in the transport proteins translocating the solute across the membrane
sodium potassium pumpactively maintains the gradient of sodium ions (Na+) and potassium ions (K+) across the plasma membrane of animal cells . K+ concentration is low outside animal cell and high inside the cell. Na+ concentration is high outside an animal cell and low inside the cell. the sodium potassium pump maintains these concentration gradients using the energy of one ATP to pump three Na+ out and two K+ in
voltageelectrical potential energy due to the separation of opposite charges
membrane potentialvoltage across a membrane. ranges from -50 to -200 millivolts. inside of cell negative compared to the outside
electrochemical gradientdrive the diffusion of ions across a membrane 1. chemical force based on an ions concentration gradient. 2. the other is an electrical force based on the effect of the membrane potential on the ion's movement ion diffuses down its electrochemical gradient
electrogenic pumpsspecial transport proteins that generate the voltage gradient across a membrane an example is the Na+-K+ pump restores the electrochemical gradient not only by the active transport of Na+ and K+ setting up a concentration gradien but because it pumps 2 K+ for every 3 Na+ setting up a voltage across membrane
proton pumpin plants bacteria and fungi it is the major electrogenic pump actively transporting H+ out of the cell
cotransporta single ATP powered pump that transports one solute can indirectly drive the active transport of several other solutes in this mechanism as the solute that has been actively transported diffuses back passively through a transport protein its movement can be coupled with the active transport of another substance against its concentration gradient
phagocytosisthe cell engulfs a particle by extending psedopodia around it and packaging it in a large vacuole
pinocytosisa cell creates a vesicle around a droplet of extracellular fluid
thermodynamics(1) The study of energy transformations that occur in a collection of matter. . (2) A phenomenon in which external DNA is taken up by a cell and functions there.
1st law of thermodynamicsThe principle of conservation of energy. Energy can be transferred and transformed, but it cannot be created or destroyed.
2nd law of thermodynamicsThe principle whereby every energy transfer or transformation increases the entropy of the universe. Ordered forms of energy are at least partly converted to heat, and in spontaneous reactions, the free energy of the system also decreases.
entropyA quantitative measure of disorder or randomness, symbolized by S.
free energyThe portion of a system's energy that can perform work when temperature is uniform throughout the system.
exergonic reactionA spontaneous chemical reaction in which there is a net release of free energy
endergonic reactionA nonspontaneous chemical reaction in which free energy is absorbed from the surroundings
ATPAn adenine-containing nucleoside triphosphate that releases free energy when its phosphate bonds are hydrolyzed. This energy is used to drive endergonic reactions in cells.
energy couplingIn cellular metabolism, the use of energy released from an exergonic reaction to drive an endergonic reaction.
phospholipidA molecule that is a constituent of the inner bilayer of biological membranes, having a polar, hydrophilic head and a nonpolar, hydrophobic tail.
catalystA chemical agent that changes the rate of a reaction without being consumed by the reaction.
activation energyThe amount of energy that reactants must absorb before a chemical reaction will start.
substrateThe reactant on which an enzyme works
competitive inhibitorA substance that reduces the activity of an enzyme by entering the active site in place of the substrate whose structure it mimics.
noncompetitive inhibitorA substance that reduces the activity of an enzyme by binding to a location remote from the active site, changing its conformation so that it no longer binds to the substrate.
active siteThe specific portion of an enzyme that attaches to the substrate by means of weak chemical bonds.
induced fitThe change in shape of the active site of an enzyme so that it binds more snugly to the substrate, induced by entry of the substrate.
cofactorAny nonprotein molecule or ion that is required for the proper functioning of an enzyme can be permanently bound to the active site or may bind loosely with the substrate during catalysis.
coenzymeAn organic molecule serving as a cofactor. Most vitamins function in important metabolic reactions.
allosteric siteA specific receptor site on some part of an enzyme molecule remote from the active site.
feedback inhibitionA method of metabolic control in which the end product of a metabolic pathway acts as an inhibitor of an enzyme within that pathway.
fermentationA catabolic process that makes a limited amount of ATP from glucose without an electron transport chain and that produces a characteristic end product, such as ethyl alcohol or lactic acid.
cellular respirationThe most prevalent and efficient catabolic pathway for the production of ATP, in which oxygen is consumed as a reactant along with the organic fuel.
redox reactionsA chemical reaction involving the transfer of one or more electrons from one reactant to another; also called oxidation-reduction reaction
oxidationThe loss of electrons from a substance involved in a redox reaction.
reductionThe addition of electrons to a substance involved in a redox reaction.
reducing agentThe electron donor in a redox reaction.
oxidizing agentThe electron acceptor in a redox reaction.
NAD+a coenzyme present in all cells that helps enzymes transfer electrons during the redox reactions of metabolism
electron transport chainA sequence of electron carrier molecules (membrane proteins) that shuttle electrons during the redox reactions that release energy used to make ATP.
glycolysisThe splitting of glucose into pyruvate. Glycolysis is the one metabolic pathway that occurs in all living cells, serving as the starting point for fermentation or aerobic respiration
krebs CycleA chemical cycle involving eight steps that completes the metabolic breakdown of glucose molecules to carbon dioxide; occurs within the mitochondrion; the second major stage in cellular respiration.
Oxidative PhosphorylationThe production of ATP using energy derived from the redox reactions of an electron transport chain.
Substrate-Level PhosphorylationThe formation of ATP by directly transferring a phosphate group to ADP from an intermediate substrate in catabolism.
Acetyl CoAThe entry compound for the Krebs cycle in cellular respiration; formed from a fragment of pyruvate attached to a coenzyme.
CytochromeAn iron-containing protein, a component of electron transport chains in mitochondria and chloroplasts
ATP synthaseA cluster of several membrane proteins found in the mitochondrial crista (and bacterial plasma membrane) that function in chemiosmosis with adjacent electron transport chains, using the energy of a hydrogen ion concentration gradient to make ATP. Provide a port through which hydrogen ions diffuse into the matrix of a mitrochondrion.
proton motive forceThe potential energy stored in the form of an electrochemical gradient, generated by the pumping of hydrogen ions across biological membranes during chemiosmosis.
aerobicContaining oxygen; referring to an organism, environment, or cellular process that requires oxygen.
anaerobicLacking oxygen; referring to an organism, environment, or cellular process that lacks oxygen and may be poisoned by it.
alcohol fermentationThe conversion of pyruvate to carbon dioxide and ethyl alcohol.
lactid acid fermentationThe conversion of pyruvate to lactate with no release of carbon dioxide.
faculative anaerobesAn organism that makes ATP by aerobic respiration if oxygen is present but that switches to fermentation under anaerobic conditions.
beta oxidationA metabolic sequence that breaks fatty acids down to two-carbon fragments which enter the Krebs cycle as acetyl CoA.
autotrophsAn organism that obtains organic food molecules without eating other organisms or substances derived from other organisms. Autotrophs use energy from the sun or from the oxidation of inorganic substances to make organic molecules from inorganic ones.
heterotrophsAn organism that obtains organic food molecules by eating other organisms or their by-products.
chlorophyllA green pigment located within the chloroplasts of plants. Chlorophyll a can participate directly in the light reactions, which convert solar energy to chemical energy.
stromaThe fluid of the chloroplast surrounding the thylakoid membrane; involved in the synthesis of organic molecules from carbon dioxide and water.
light reactionsThe steps in photosynthesis that occur on the thylakoid membranes of the chloroplast and that convert solar energy to the chemical energy of ATP and NADPH, evolving oxygen in the process.
calvin cycleThe second of two major stages in photosynthesis (following the light reactions), involving atmospheric CO2 fixation and reduction of the fixed carbon into carbohydrate.
NADP+An acceptor that temporarily stores energized electrons produced during the light reactions.
photophosphorylationThe process of generating ATP from ADP and phosphate by means of a proton-motive force generated by the thylakoid membrane of the chloroplast during the light reactions of photosynthesis.
wavelengthThe distance between crests of waves, such as those of the electromagnetic spectrum.
electromagnetic spectrumThe entire spectrum of radiation ranging in wavelength from less than a nanometer to more than a kilometer.
visible lightThat portion of the electromagnetic spectrum detected as various colors by the human eye, ranging in wavelength from about 380 nm to about 750 nm.
protonsA quantum, or discrete amount, of light energy.
spectrophotometerAn instrument that measures the proportions of light of different wavelengths absorbed and transmitted by a pigment solution.
absorption spectrumThe range of a pigment's ability to absorb various wavelengths of light.
chlorophyll AA type of blue-green photosynthetic pigment that participates directly in the light reactions.
chlorophyll BA type of yellow-green accessory photosynthetic pigment that transfers energy to chlorophyll a.
action spectrumA profile of the relative performance of different wavelengths of light.
carotenoidsAn accessory pigment, either yellow or orange, in the chloroplasts of plants. By absorbing wavelengths of light that chlorophyll cannot, carotenoids broaden the spectrum of colors that can drive photosynthesis.
reaction centerThe chlorophyll a molecule and the primary electron acceptor in a photosystem; they trigger the light reactions of photosynthesis. The chlorophyll donates an electron, excited by light energy, to the primary electron acceptor, which passes an electron to an electron transport chain.
primary electron acceptorA specialized molecule sharing the reaction center with the chlorophyll a molecule; it accepts an electron from the chlorophyll a molecule.
photosystem IOne of two light-harvesting units of a chloroplast's thylakoid membrane; it uses the P700 reaction-center chlorophyll.
photosystem IIOne of two light-harvesting units of a chloroplast's thylakoid membrane; it uses the P680 reaction-center chlorophyll.
noncyclic electron flowA route of electron flow during the light reactions of photosynthesis that involves both photosystems and produces ATP, NADPH, and oxygen. The net electron flow is from water to NADP+.
bundle sheath cellA type of photosynthetic cell arranged into tightly packed sheaths around the veins of a leaf.
mesophyll cellA loosely arranged photosynthetic cell located between the bundle sheath and the leaf surface.
CAMA plant that uses crassulacean acid metabolism, an adaptation for photosynthesis in arid conditions, first discovered in the family Crassulaceae. Carbon dioxide entering open stomata during the night is converted into organic acids, which release CO2 for the Calvin cycle during the day, when stomata are closed.
noncyclic phosphorylationThe production of ATP by noncyclic electron flow.
cyclic electron flowA route of electron flow during the light reactions of photosynthesis that involves only photosystem I and that produces ATP but not NADPH or oxygen
cyclic photophosphorylationThe generation of ATP by cyclic electron flow.
rubisco Ribulose carboxylase,the enzyme that catalyzes the first step of the Calvin cycle (the addition of CO2 to RuBP, or ribulose bisphosphate).
C3 plantsA plant that uses the Calvin cycle for the initial steps that incorporate CO2 into organic material, forming a three-carbon compound as the first stable intermediate.
photorespirationA metabolic pathway that consumes oxygen, releases carbon dioxide, generates no ATP, and decreases photosynthetic output; generally occurs on hot, dry, bright days, when stomata close and the oxygen concentration in the leaf exceeds that of carbon dioxide.
C4 plantsA plant that prefaces the Calvin cycle with reactions that incorporate CO2 into four-carbon compounds, the end product of which supplies CO2 for the Calvin cycle.
cell divisionreproduction of cells
cell cyclesequence of events in the life of a cell, from its origin in the division of a parent cell until its own division into two composed of M, G1, S, and G2 phases
genomecomplete complement of organisms genes; genetic material
chromosomesgene carrying structure found in nucleus- consists of 1 very long DNA molecules and associated proteins
somatic cellsany cell in multicellular organism except an egg or sperm
gametes sex cells(haploid cells; egg or sperm) unite to form a diploid zygote
chromatincomplex of DNA and proteins that makes up a eukaryotic chromosome
sister chromatidsreplicated forms of chromosomes joined together by the centromere and separated during mitosis and meiosis II
centromerecentralized region that joins the two sister chromatids
mitosisnuclear division process; prophase, prometaphase, metaphase, anaphase, and telophse
cytokenisisthe division of the cytoplasm to form two seperate daughter cells after mitosis
meiosisa two stage type of cell division in sexually reproducing organims that results in cells with half the chromosomes number of the original cells
mitotoic phasephase of cell cycle that includes mitosis and cytokenisis
interphaseperiod when cell cycle when cell is not dividing- cell metabolic activity is high, chromsomes and organelles are duplicated and cell size may increase. 90% of cell cycle
G1 phasefirst growth phase of the cell cycle, consisting of the portion of interphase, after DNA synthesis occurs
G2 phasethe second growth face of the cell cycle consisting of the portion of interphase after DNA synthesis occurs
S phasesynthesis phase of cell cycle; portion of interphase which DNA is replicated
prophasethe first subphase of mitosis in which the chromatin is condensing and the mitotic spindle begins to form but the nucleolus and nucleus are still in intact
cell platea double membrane across the midline of a dividing plant cell between which the new cell wall forms during cytokenisis
prometaphaseThe second subphase of mitosis, in which discrete chromosomes consisting of identical sister chromatids appear, the nuclear envelope fragments, and the spindle microtubules attach to the kinetochores of the chromosomes.
metaphase3rd subphase in mitosis; spindle is complete and the chromosomes attached to microtubules at their kinetochores are aligned at he metaphase plate
anaphasefourth subphase of mitosis in which the chromatids of each chromosome have separated and the daughter chromosomes are moving to the poles of the cell
telophasethe fifth and final subphase of mitosis in which daughter nuclei are forming and cytokenisis actually begins
mitotic spindlean assemblage of microtubules and associated proteins that is involved in the movements of chromosomes during mitosis
kinetochorea specialized region on the centromere that links each sister chromatid to the mitotic spindle
binary fissionprokaryotes cell division . Each daughter cell receives a copy of the single parental chromosome
cleavagecytokenisis process; pinching of the plasma membrane; the succession of rapid cell division without growth during early embryonic development that converts the zygote into a ball of cell
cell cyclecontrol system a cyclically operating set of molecultes in the cell that triggers and coordinates key events in the cell cycle
G0phase a non dividing face of the cell cycle consisting of the portion of interphase before DNA synthesis begins
cyclina regularity protein whose concentration fluctuates cyclically
growth factora protein that must be present in the extracellular environment for the growth and normal development of certain types of cells
density dependent inhibitorany factor that has a greater impact on a population as the population increases
transformationthe conversion of a normal animal cell to a cancerous cell.
tumora mass of abnormal cells within otherwise normal tissue, caused by the uncontrolled growth of a transformed cell
benign tumora mass of abnormal cells that remains at the site of origin
malignant tumorcancerous tumor that is invasive enough to impair function of one or more organs
metastasisthe spread of cancer to locations distant form original site
genesA discrete unit of hereditary information consisting of a specific nucleotide sequence in DNA (or RNA, in some viruses).
heredityThe transmission of traits from one generation to the next.
variationDifferences between members of the same species.
geneticsThe scientific study of heredity and hereditary variation.
asexual reproductionA type of reproduction involving only one parent that produces genetically identical offspring by budding or by the division of a single cell or the entire organism into two or more parts.
sexual reproductionA type of reproduction in which two parents give rise to offspring that have unique combinations of genes inherited from the gametes of the two parents.
clone(1) A lineage of genetically identical individuals or cells. (2) In popular usage, a single individual organism that is genetically identical to another individual. (3) As a verb, to make one or more genetic replicas of an individual or cell.
life cycleThe generation-to-generation sequence of stages in the reproductive history of an organism.
somatic cellAny cell in a multicellular organism except a sperm or egg cell.
karyotypeA method of organizing the chromosomes of a cell in relation to number, size, and type.
homologous chromosomesChromosome pairs of the same length, centromere position, and staining pattern that possess genes for the same characters at corresponding loci. One homologous chromosome is inherited from the organism's father, the other from the mother.
crossing overThe reciprocal exchange of genetic material between nonsister chromatids during synapsis of meiosis I.
sex chromosomesOne of the pair of chromosomes responsible for determining the sex of an individual
gametesA haploid cell such as an egg or sperm. Gametes unite during sexual reproduction to produce a diploid zygote.
haploid cellsA cell containing only one set of chromosomes (n).
fertilizationThe union of haploid gametes to produce a diploid zygote.
diploid cellsA cell containing two sets of chromosomes (2n), one set inherited from each parent.
meiosisA two-stage type of cell division in sexually reproducing organisms that results in cells with half the chromosome number of the original cell.
alternation of generationsA life cycle in which there is both a multicellular diploid form, the sporophyte, and a multicellular haploid form, the gametophyte; characteristic of plants.
sporophyte .The multicellular diploid form in organisms undergoing alternation of generations that results from a union of gametes and that meiotically produces haploid spores that grow into the gametophyte generation
gametophyteThe multicellular haploid form in organisms undergoing alternation of generations that mitotically produces haploid gametes that unite and grow into the sporophyte generation.
synapsisThe pairing of replicated homologous chromosomes during prophase I of meiosis.
tetradA paired set of homologous chromosomes, each composed of two sister chromatids. Tetrads form during prophase I of meiosis.
chiasmataThe X-shaped, microscopically visible region representing homologous chromatids that have exchanged genetic material through crossing over during meiosis.
characterA heritable feature.
traitA characteristic
true breedingPlants that produce offspring of the same variety when they self-pollinate.
hybridizationThe mating, or crossing, of two varieties.
P. generationThe parent individuals from which offspring are derived in studies of inheritance; P stands for parental.
F1 generationThe first filial, or hybrid, offspring in a genetic cross-fertilization.
F2 generationOffspring resulting from interbreeding of the hybrid F1 generation.
dominant alleleIn a heterozygote, the allele that is fully expressed in the phenotype.
recessive alleleIn a heterozygote, the allele that is completely masked in the phenotype.
codominanceA phenotypic situation in which the two alleles affect the phenotype in separate, distinguishable ways
complete dominanceA type of inheritance in which the phenotypes of the heterozygote and dominant homozygote are indistinguishable.
law of segregrationMendel's first law, stating that allele pairs separate during gamete formation, and then randomly re-form as pairs during the fusion of gametes at fertilization.
punnett squareA diagram used in the study of inheritance to show the results of random fertilization.
homozygousHaving two identical alleles for a given trait.
heterozygousHaving two different alleles for a given genetic character
phenotypeThe physical and physiological traits of an organism.
genotypeThe genetic makeup of an organism
monohybridsAn organism that is heterozygous with respect to a single gene of interest. A monohybrid results from a cross between parents homozygous for different alleles. For example, parents of genotypes AA and aa produce a monohybrid genotype of Aa.
law of independent assortmentMendel's second law, stating that each allele pair segregates independently during gamete formation; applies when genes for two characteristics are located on different pairs of homologous chromosomes.
incomplete dominanceA type of inheritance in which F1 hybrids have an appearance that is intermediate between the phenotypes of the parental varieties
pleiotropyThe ability of a single gene to have multiple effects.
epistasisA phenomenon in which one gene alters the expression of another gene that is independently inherited
quantitive charactersA heritable feature in a population that varies continuously as a result of environmental influences and the additive effect of two or more genes (polygenic inheritance).
polygenic inheritanceAn additive effect of two or more gene loci on a single phenotypic character.
pedigreeA family tree describing the occurrence of heritable characters in parents and offspring across as many generations as possible.
cystic fibrosisA genetic disorder that occurs in people with two copies of a certain recessive allele; characterized by an excessive secretion of mucus and consequent vulnerability to infection; fatal if untreated.
sickle cell anemiaA human genetic disease of red blood cells caused by the substitution of a single amino acid in the hemoglobin protein; it is the most common inherited disease among African Americans.
Huntington's DiseaseA genetic disorder caused by a dominant allele that causes deterioraton of brain tissue in middle age
Phenylketonuriahuman genetic disorder linked to a defective form of the enzyme phenylalanine hydroxylase; brain does not develop in infancy; called PKU
Chronic Villi Samplingused for genetic screening; cells from chorion, which nourishes the embryo, are removed ;results more rapid;8th week of pregnancy
Tay Sacsgenetic disorder that is common in the jewish population;deterioration of the CNS in ingancy
amniocentesisA technique for determining genetic abnormalities in a fetus by the presence of certain chemicals or defective fetal cells in the amniotic fluid, obtained by aspiration from a needle inserted into the uterus.
chromosome theory of inheritanceA basic principle in biology stating that genes are located on chromosomes and that the behavior of chromosomes during meiosis accounts for inheritance patterns.
wild typeAn individual with the normal phenotype.
sex linked genesA gene located on a sex chromosome.
duchenne muscular dystropyA human genetic disease caused by a sex-linked recessive allele; characterized by progressive weakening and a loss of muscle tissue.
linked genesGenes that are located on the same chromosome.
genetic recombinationThe general term for the production of offspring with new combinations of traits inherited from the two parents.
parental typesOffspring with a phenotype that matches one of the parental phenotypes.
linkage mapA genetic map based on the frequencies of recombination between markers during crossing over of homologous chromosomes. The greater the frequency of recombination between two genetic markers, the farther apart they are assumed to be. See also genetic map.
cytological mapsCharts of chromosomes that locate genes with respect to chromosomal features.
hemophiliaA human genetic disease caused by a sex-linked recessive allele, characterized by excessive bleeding following injury.
nondisjunctionAn accident of meiosis or mitosis, in which the members of a pair of homologous chromosomes or sister chromatids fail to move apart properly.
trisomicA chromosomal condition in which a particular cell has an extra copy of one chromosome, instead of the normal two; the cell is said to be trisomic for that chromosome.
monosomicA chromosomal condition in which a particular cell has only one copy of a chromosome, instead of the normal two; the cell is said to be monosomic for that chromosome.
polyploidyA chromosomal alteration in which the organism possesses more than two complete chromosome sets.
duplicationAn aberration in chromosome structure resulting from an error in meiosis or mutagens; duplication of a portion of a chromosome resulting from fusion with a fragment from a homologous chromosome.
inversionAn aberration in chromosome structure resulting from an error in meiosis or from mutagens; specifically, reattachment of a chromosomal fragment to the chromosome from which the fragment originated, but in a reverse orientation.
barr bodyA dense object lying along the inside of the nuclear envelope in female mammalian cells, representing an inactivated X chromosome.
transformation(1) The conversion of a normal animal cell to a cancerous cell. (2) A change in genotype and phenotype due to the assimilation of external DNA by a cell.
bacteriophageA virus that infects bacteria; also called a phage.
double helixThe form of native DNA, referring to its two adjacent polynucleotide strands wound into a spiral shape.
originsreplication sites where the replication of a DNA molecule begins.
RNA polymeraseAn enzyme that links together the growing chain of ribonucleotides during transcription.
leading strandThe new continuous complementary DNA strand synthesized along the template strand in the mandatory 5' 3' direction.
lagging strandA discontinuously synthesized DNA strand that elongates in a direction away from the replication fork.
DNA ligaseA linking enzyme essential for DNA replication; catalyzes the covalent bonding of the 39 end of a new DNA fragment to the 59 end of a growing chain.
primerAn already existing RNA chain bound to template DNA to which DNA nucleotides are added during DNA synthesis.
helicaseAn enzyme that untwists the double helix of DNA at the replication forks.
nucleaseA team of enzymes that hydrolyze DNA and RNA into their component nucleotides
mismatch repairThe cellular process that uses special enzymes to fix incorrectly paired nucleotides.
replication forkA Y-shaped region on a replicating DNA molecule where new strands are growing.
telomeresThe protective structure at each end of a eukaryotic chromosome. Specifically, the tandemly repetitive DNA at the end of the chromosome's DNA molecule. See also repetitive DNA.
transcriptionThe synthesis of RNA on a DNA template.
mRNAA type of RNA, synthesized from DNA, that attaches to ribosomes in the cytoplasm and specifies the primary structure of a protein.
translationThe synthesis of a polypeptide using the genetic information encoded in an mRNA molecule. There is a change of "language" from nucleotides to amino acids
RNA processingModification of RNA before it leaves the nucleus, a process unique to eukaryotes.
primary transcriptAn initial RNA transcript; also called pre-mRNA.
triplet codeA set of three-nucleotide-long words that specify the amino acids for polypeptide chains.
template strand TThe DNA strand that provides the template for ordering the sequence of nucleotides in an RNA transcript.
codonsA three-nucleotide sequence of DNA or mRNA that specifies a particular amino acid or termination signal; the basic unit of the genetic code.
promoterA specific nucleotide sequence in DNA that binds RNA polymerase and indicates where to start transcribing RNA.
terminatorA special sequence of nucleotides in DNA that marks the end of a gene. It signals RNA polymerase to release the newly made RNA molecule, which then departs from the gene
transcription unita region of a DNA molecule that is transcribed into an RNA molecule
RNA splicingThe removal of noncoding portions (introns) of the RNA molecule after initial synthesis.
intronsA noncoding, intervening sequence within a eukaryotic gene.
exonsA coding region of a eukaryotic gene. Exons, which are expressed, are separated from each other by introns.
spliceosomeA complex assembly that interacts with the ends of an RNA intron in splicing RNA, releasing the intron, and joining the two adjacent exons.
ribosomesA cell organelle constructed in the nucleolus and functioning as the site of protein synthesis in the cytoplasm; consists of rRNA and protein molecules, which make up two subunits.
domainsA taxonomic category above the kingdom level. The three domains are Archaea, Bacteria, and Eukarya.
transfer RNAAn RNA molecule that functions as an interpreter between nucleic acid and protein language by picking up specific amino acids and recognizing the appropriate codons in the mRNA.
anticodonA specialized base triplet at one end of a tRNA molecule that recognizes a particular complementary codon on an mRNA molecule.
ribosomal RNAThe most abundant type of RNA, which together with proteins, forms the structure of ribosomes. Ribosomes coordinate the sequential coupling of tRNA molecules to mRNA codons.
polyribosomesAn aggregation of several ribosomes attached to one messenger RNA molecule.
point mutationA change in a gene at a single nucleotide pair
base pair substitutionA point mutation; the replacement of one nucleotide and its partner in the complementary DNA strand by another pair of nucleotides.
missense mutations The most common type of mutation, a base-pair substitution in which the new codon makes sense in that it still codes for an amino acid.
frameshift mutationA mutation occurring when the number of nucleotides inserted or deleted is not a multiple of three, resulting in the improper grouping of the following nucleotides into codons.
insertionA mutation involving the addition of one or more nucleotide pairs to a gene.
deletion(1) A deficiency in a chromosome resulting from the loss of a fragment through breakage. (2) A mutational loss of one or more nucleotide pairs from a gene.
mutagensA chemical or physical agent that interacts with DNA and causes a mutation.
capsidThe protein shell that encloses a viral genome. It may be rod-shaped, polyhedral, or more complete in shape.
viral envelopeA membrane that cloaks the capsid that in turn encloses a viral genome.


Instructional Technology Facilitator
Surry County Schools

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